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Home » Beans & Legumes

Pinto Bean Shio Koji Tomato Stew

Published: Jul 3, 2026 by Vegin Vegan Vegun! · This post may contain affiliate links · Leave a Comment

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🇯🇵日本語で読む

A simple, savory pinto bean stew with a Japanese-twist, made with tomatoes and shio koji — a Japanese fermented rice seasoning that adds saltiness, umami, and a touch of sweetness while building layers of flavor with tomatoes.

Japanese-inspired pinto bean stew with tomatoes and shio koji served in a bowl

This is one of my favorite vegan main dishes to make with pinto beans. Rich, savory, and full of umami, it's simple but satisfying.

In Japan, pinto beans are often simmered with sugar, but this version is savory, inspired by Mexican and Indian bean dishes. Rather than relying on spices, I let shio koji and tomatoes build layers of savory flavor.

The recipe itself is simple. If you already have cooked pinto beans in the fridge, you're halfway there. Simply add everything to a pot and simmer for about 15 minutes.

I usually serve it with steamed rice and lightly pickled Japanese cucumber. If there's soup, even better, but I'm perfectly happy with this for a simple lunch.

Jump to:
  • 🧺 Why This Recipe Works
  • 🌿 Ingredients
  • 📖 How to Make
  • 📝 Tips
  • 📘 Storage
  • 📚 FAQ
  • 🫘 More Pinto Bean Recipes
  • 🍽️ More Bean Recipes
  • 🥢 More Shio Koji Recipes
  • ✏️ Recipe Card
Pinto bean stew with tomatoes and shio koji served over steamed rice

🧺 Why This Recipe Works

  • Easy yet satisfying — No spices, no sautéing. Just a pot, a handful of ingredients, and about 15 minutes.
  • Umami-rich flavor — Both shio koji and tomatoes are packed with glutamate, creating a depth of flavor that goes beyond the simple ingredient list.
  • 100% plant-based — A hearty main dish for vegans and vegetarians.

🌿 Ingredients

Ingredients for pinto bean stew: cooked pinto beans, tomatoes, shio koji, and cilantro
  • Cooked pinto beans — I like using home-cooked pinto beans for this recipe. The cooking liquid is full of flavor, so I add that to the pot too. If you don't have any, simply use water instead. →📖 How to Cook Pinto Beans
  • Tomatoes — I usually use frozen cherry tomatoes from last summer's harvest and add them to the pot whole. Fresh tomatoes or canned tomatoes work just as well.
  • Shio koji — A traditional Japanese seasoning made from rice koji (steamed rice inoculated with the mold Aspergillus oryzae), salt, and water. It adds saltiness, umami, and a touch of sweetness, bringing depth of flavor to the stew with just one seasoning. Both homemade or store-bought shio koji work well. → 📖 How to Make Shio Koji
  • Cilantro — Finely chop the stems and add them with the other ingredients. Stir the leaves in at the end, or scatter them over the top before serving. It may seem like a small ingredient, but it makes a noticeable difference to the finished stew.

Full measurements are in the recipe card at the bottom 👇

📖 How to Make

Cooked pinto beans, tomatoes, shio koji, cilantro stems, and cooking liquid added to a pot
  1. Add everything to the pot
    • Add all ingredients except the cilantro leaves to the pot.
Pinto bean stew simmering in a pot as the tomatoes soften
  1. Simmer
    • Heat over medium, stirring occasionally.
    • Once it comes to a simmer, reduce the heat to low.
    • As the tomatoes soften, gently mash them with a spatula and continue simmering until the liquid reduces and the stew thickens.
    • Remove from heat and stir in the cilantro leaves to finish.
Close-up of Japanese-inspired pinto bean stew with tomatoes and shio koji

📝 Tips

▶︎ Tomato skins — As the tomatoes cook, the skins will float to the surface. Removing them only takes a moment and makes the finished stew feel a little nicer to eat.

Tomato skins removed from the stew during cooking

▶︎ Consistency — The stew will continue to thicken as it cools. If you like a little more broth, stop cooking while it still looks slightly looser than you'd like.

▶︎ For extra richness — Instead of adding everything to the pot at once, sauté a little minced garlic in oil first, then add the remaining ingredients.

📘 Storage

Once cooled, transfer to an airtight container and refrigerate. The beans will firm up in the fridge, but soften again when reheated.

If I have the time, I like to let it cool before serving. The flavors settle together as it rests.

📚 FAQ

Do I need to prepare the pinto beans beforehand?

Yes. This recipe uses cooked pinto beans, so you'll need to cook them ahead of time. You can find my step-by-step method here: 📖 How to Cook Pinto Beans.

🫘 More Pinto Bean Recipes

Vegan recipes using pinto beans:

  • How to Cook Pinto Beans in a Pressure Cooker

🍽️ More Bean Recipes

More vegan recipes using all kinds of beans — from savory dishes to desserts. (👉 See all)

  • A healthy plant-based dessert of mung beans and agar jelly, served with coconut milk sauce
    Mung Bean Coconut Milk Dessert with Agar & Banana Shiratama
  • Sweet mung bean brown rice congee with banana and soy milk
    Sweet Mung Bean Brown Rice Congee with Banana & Soy Milk
  • How to Cook Mung Beans in a Pressure Cooker
  • Vegan carbonara with chickpea flour and soy milk, topped with black pepper
    Creamy Vegan Carbonara with Chickpea Flour

🥢 More Shio Koji Recipes

Vegan recipes using homemade shio koji:

  • Vegan mascarpone cheese made with soy yogurt
    Vegan Mascarpone Cream|Made with Strained Soy Yogurt
  • Mediterranean chickpea salad served in a bowl — vegan and dairy-free
    Chickpea Cucumber Tomato Salad with Shio Koji (Vegan Greek-Style)
  • Vegan chickpea Italian tomato soup with rosemary and garlic, oil-free and plant-based
    Chickpea Tomato Soup (Italian-Inspired, Vegan & Oil-Free)
Pinto bean stew with tomatoes, shio koji, and chopped cilantro

✏️ Recipe Card

Japanese-inspired pinto bean stew with tomatoes and shio koji served in a bowl

Pinto Bean Shio Koji Tomato Stew

by Vegin Vegan Vegun!
A simple Japanese-inspired pinto bean stew made by simmering cooked pinto beans with tomatoes and  shio koji.
Savory, hearty, and perfect with steamed rice for an everyday meal.
Print Recipe Pin Recipe
Prep Time 5 minutes mins
Cook Time 15 minutes mins
Total 20 minutes mins
Course Main dish
Cuisine Japanese-inspired
Servings 2

Ingredients
  

  • 280 g cooked pinto beans
  • 150 ml pinto bean cooking liquid (or water)
  • 85 g cherry tomatoes (fresh or frozen, or use canned tomatoes)
  • 2 teaspoon shio koji
  • cilantro (to taste)

Instructions
 

  • Finely chop the cilantro stems and leaves separately.
    cilantro
  • Add the cooked pinto beans, pinto bean cooking liquid (or water), tomatoes, shio koji, and the chopped cilantro stems to a pot.
    280 g cooked pinto beans
    150 ml pinto bean cooking liquid
    85 g cherry tomatoes
    2 tsp shio koji
  • Cook over medium heat, stirring occasionally.
  • Once it comes to a simmer, reduce the heat to low.
  • As the tomatoes soften, gently mash them with a spatula.
  • Remove any tomato skins that float to the surface, if you like.
  • Continue simmering until the liquid reduces and the stew thickens.
  • Remove from the heat, stir in the chopped cilantro leaves, and serve.
    cilantro

Notes

  • For a quicker stew, reduce the cooking liquid to 50–100 ml.
  • Fresh, frozen, or canned tomatoes all work well in this recipe.
Keyword Homemade Shio Koji, Japanese-inspired stew, pinto bean stew, pinto beans, tomato stew, vegan bean stew, vegan pinto bean recipe

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